ydcI

ydcI
168

similar to RNase

Locus
BSU_04780
Molecular weight
81.23 kDa
Isoelectric point
6.77
Protein length
719 aaSequenceBlast
Gene length
2160 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
Synonyms
ydcI
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2183 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
525,743  527,902
The protein
Domains
YqgF/RNase H-like domain (aa 321-446) (according to the Interpro database)
S1 domain (aa 646-718) (according to UniProt)
Structure
2OCE (PDB) (the protein from Pseudomonas aeruginosa, 43% identity)
O31489 (AlphaFold)
Modification
phosphorylated on Arg-473 PubMed
Expression and Regulation
Operons
Genes
ydcI
Description
PubMed
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ydcI

2025-02-26 08:57:02

ghost

59

a69f5bb504be0ef20320245e9999e0f9332b75f0

CC79079D21DCFA77791C5215E97F1F4FC5C63FB3

Biological materials
Mutant
GP3318 (ΔydcI::phleo), available in Jörg Stülke's lab
MGNA-C101 (ydcI::erm), available at the NBRP B. subtilis, Japan
BKE04780 (ydcI::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTAACCAAAGCCTCCAA,  downstream forward: _UP4_TAAAAGCACTGCTTACGAGC
BKK04780 (ydcI::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTAACCAAAGCCTCCAA,  downstream forward: _UP4_TAAAAGCACTGCTTACGAGC
References
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Page visits: 2145

Time of last update: 2025-04-03 18:46:20

Author of last update: Rica