ybdJ

ybdJ
168

two-component response regulator (OmpR family)

Locus
BSU_02000
Molecular weight
26.03 kDa
Isoelectric point
6.35
Protein length
223 aaSequenceBlast
Gene length
672 bpSequenceBlast
Function
unknown
Product
two-component response regulator (OmpR family)
Essential
no
Synonyms
ybdJ
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0745 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
221,258  221,929
The protein
Protein family
OmpR family of two-component response regulators
Domains
Response regulatory domain (aa 5-116) (according to UniProt)
Structure
1KGS (PDB)(from Thermotoga maritima, 32% identity) PubMed
O31432 (AlphaFold)
Modification
phosphorylated by YbdK on an Asp residue
Effectors of protein activity
phosphorylation likely affects DNA-binding activity
Localization
cytoplasm (according to Swiss-Prot)
Biological materials
Mutant
MGNA-B956 (ybdJ::erm), available at the NBRP B. subtilis, Japan
BKE02000 (ybdJ::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_GATTAAAATACGATAACCCT,  downstream forward: _UP4_TGAAGCTCAAGACAAAATAT
BKK02000 (ybdJ::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_GATTAAAATACGATAACCCT,  downstream forward: _UP4_TGAAGCTCAAGACAAAATAT
References
Loading

5F6D14A0B360832F9FD470668B006A628B109A56

Page visits: 2398

Time of last update: 2025-03-15 02:56:38

Author of last update: Melvin.boenninger