yciB

yciB
168

putative L,D-transpeptidase

Locus
BSU_03350
Molecular weight
21.94 kDa
Isoelectric point
6.18
Protein length
194 aaSequenceBlast
Gene length
585 bpSequenceBlast
Function
unknown
Product
putative L,D-transpeptidase
Essential
no
Synonyms
yciB
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1376 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
365,170  365,754
The protein
Protein family
YkuD family (with Ldt and YqjB, according to UniProt)
Structure
4LZH (PDB) (from Klebsiella pneumoniae, 27% identity)
C0SP99 (AlphaFold)
Localization
lipoprotein, cell membrane at the cell poles PubMed
Expression and Regulation
Operons
Genes
folEB-yciB-yczL-zagA
Description
PubMed
Regulation
folE2: induced by zinc starvation (Zur) PubMed
Regulatory mechanism
Zur: repression, in the presence of zinc PubMed, in zur regulon
Sigma factors
SigA: sigma factor, PubMed, in sigA regulon
Open in new tab

folEB→zagA

2025-03-15 19:36:58

Jstuelk

125

ad7d4075bafccef586e192b5f9b59ca4750bd357

154D780A688DFF455944F618E9A71FDF4E6BA39E

Biological materials
Mutant
MGNA-B998 (yciB::erm), available at the NBRP B. subtilis, Japan
BKE03350 (yciB::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TGCAATAATGAATAATGAGA,  downstream forward: _UP4_TGAATTGAAAACCGTTGACA
BKK03350 (yciB::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TGCAATAATGAATAATGAGA,  downstream forward: _UP4_TGAATTGAAAACCGTTGACA
References
Loading

456AF184261976FAA73359E81443F7035F457D07

Page visits: 2558

Time of last update: 2025-03-16 02:09:51

Author of last update: Jstuelk