ydaE

ydaE
168

lyxose isomerase, general stress protein, survival of ethanol stress and low temperatures

Locus
BSU_04200
Molecular weight
19.11 kDa
Isoelectric point
4.88
Protein length
167 aaSequenceBlast
Gene length
504 bpSequenceBlast
Function
survival of ethanol stress and low temperatures
Product
lyxose isomerase
Essential
no
E.C.
null
Synonyms
ydaE
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG3822 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
472,585 → 473,088
The protein
Catalyzed reaction/ biological activity
D-lyxose --> D-xylulose (according to UniProt)
Protein family
D-lyxose ketol-isomerase family (single member, according to UniProt)
Structure
2Y0O (PDB) PubMed
P96578 (AlphaFold)
Expression and Regulation
Operons
Genes
ydaD-ydaE
Description
PubMed
Regulation
induced by stress (SigB) PubMed
Sigma factors
SigB: sigma factor, PubMed, in sigB regulon
Open in new tab

ydaD→ydaE

2025-03-19 06:52:27

Jstuelk

69

4fb2a110a5d336e59c462730f404e23690d89eac

7BAF2B4B190B99035F090F954FC6468528A7BBF8

Genes
ydaD-ydaE-ydaF-ydaG
Description
PubMed
Regulation
induced by stress (SigB) PubMed
Expression
expression is increased upon depletion of depletion of tRNA maturation factors rnpB or rnz PubMed
Sigma factors
SigB: sigma factor, PubMed, in sigB regulon
Open in new tab

ydaD→ydaG

2025-03-16 15:59:43

Jstuelk

89

0F01F3D4A72C13FC2BD8814FCB16A6972198E29F

A2B50F578CB3D7FDB3773EE82697C8F07A97C986

Biological materials
Mutant
MGNA-C087 (ydaE::erm), available at the NBRP B. subtilis, Japan
BKE04200 (ΔydaE::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_GATGCCCATATGTCTCACTC,  downstream forward: _UP4_TAAGGATGGGCTTAACAGCC
BKK04200 (ΔydaE::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_GATGCCCATATGTCTCACTC,  downstream forward: _UP4_TAAGGATGGGCTTAACAGCC
References
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DDE975DA2E13759B0DB8B6D219760C2E2C6032FB

Page visits: 3344

Time of last update: 2025-03-21 07:18:01

Author of last update: Melvin.boenninger