ycbG

ycbG
168

transcription regulator of the glucarate/galactarate utilization operon (GntR family)

Locus
BSU_02500
Molecular weight
26.43 kDa
Isoelectric point
5.99
Protein length
233 aaSequenceBlast
Gene length
702 bpSequenceBlast
Function
regulation of glucarate/galactarate utilization
Product
transcription regulator (GntR family)
Essential
no
Synonyms
ycbG
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2186 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
273,237  273,938
The protein
Protein family
GntR family of transcription factors
Domains
HTH gntR-type domain (aa 16–84) (according to UniProt)
Structure
2DI3 (PDB) (from Corynebacterium glutamicum, corresponds to aa 20 ... 178, 32.7% identity) PubMed
P42239 (AlphaFold)
Expression and Regulation
Operons
Genes
ycbC-ycbD-ycbE-ycbF-ycbG-ycbH-ycbJ
Description
PubMed
Regulation
induced by D-glucarate/galactarate (YcbG) PubMed
Regulatory mechanism
YcbG: repression, PubMed, in ycbG regulon
AbrB: repression, PubMed, in abrB regulon
Open in new tab

ycbC→ycbJ

2025-03-10 23:53:20

ghost

122

a8e395a36da4d417bafa3e16f332fbbf2dcf2e61

24EBFC92FB6A93BD115AC81FF68694FB539EE76E

Biological materials
Mutant
MGNA-C030 (ycbG::erm), available at the NBRP B. subtilis, Japan
BKE02500 (ycbG::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CACGAACAACTCTCCCTTCA,  downstream forward: _UP4_TAATGGTGAGCAACCGCAGT
BKK02500 (ycbG::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CACGAACAACTCTCCCTTCA,  downstream forward: _UP4_TAATGGTGAGCAACCGCAGT
References
Loading

1A65880F68898002EE8774F34EDC47F0243B7273

Page visits: 2589

Time of last update: 2025-03-14 14:55:04

Author of last update: Jstuelk