Difference between revisions of "RhaR"
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| − | * '''Description:''' transcriptional regulator ([[DeoR family]]) <br/><br/> | + | * '''Description:''' transcriptional regulator ([[DeoR family]]) of the ''[[rhaEW]]-[[rhaR]]-[[rhaB]]-[[rhaM]]-[[rhaA]]'' operon<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 12: | Line 12: | ||
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator ([[DeoR family]]) | |style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator ([[DeoR family]]) | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of rhamnose utilization |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31210 rhaR] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31210 rhaR] | ||
| Line 38: | Line 38: | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[utilization of specific carbon sources]]}}, | ||
{{SubtiWiki category|[[transcription factors and their control]]}} | {{SubtiWiki category|[[transcription factors and their control]]}} | ||
| Line 101: | Line 102: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[rhaEW]]-[[rhaR]]-[[rhaB]]-[[rhaM]]-[[rhaA]]'' {{PubMed|22383849}} | + | * '''Operon:''' |
| + | ** ''[[rhaEW]]-[[rhaR]]-[[rhaB]]-[[rhaM]]-[[rhaA]]'' {{PubMed|22383849}} | ||
| + | ** ''[[rhaR]]-[[rhaB]]-[[rhaM]]-[[rhaA]]'' {{PubMed|22383849}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yulB_3201027_3201803_-1 rhaR] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yulB_3201027_3201803_-1 rhaR] {{PubMed|22383849}} | ||
Revision as of 14:53, 7 June 2014
| Gene name | rhaR |
| Synonyms | yulB |
| Essential | no |
| Product | transcriptional regulator (DeoR family) |
| Function | control of rhamnose utilization |
| Gene expression levels in SubtiExpress: rhaR | |
| MW, pI | 28 kDa, 7.368 |
| Gene length, protein length | 774 bp, 258 aa |
| Immediate neighbours | rhaB, rhaEW |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
utilization of specific carbon sources, transcription factors and their control
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU31210
Phenotypes of a mutant
Database entries
- BsubCyc: BSU31210
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- BsubCyc: BSU31210
- Structure:
- UniProt: O05261
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
